PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3187_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 315aa    MW: 34993.8 Da    PI: 8.3054
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3187_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-112396098
                EE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 60 vltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +l++GWk+FvkangLk+g+++++kl++ +++++v++++ 
  RrC3187_p2  2 TLGDGWKSFVKANGLKTGESFTLKLNW-EDTTPVLSLCP 39
                699**********************99.88989999986 PP
2B375.55.9e-24106199198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f++ ++++d+lk+grl+lp +f++e++++k++  ++tl  ++g +W v l    k+gr+ l+kGWk+F+kangLk+gD+++F+ ++ +++++v++++r
  RrC3187_p2 106 FLTLTITPDSLKHGRLRLPLEFMTENNMNKPG--DITLLGKDGVKWLVSLL-LEKRGRMSLGKGWKDFAKANGLKTGDSITFESIW-ENATPVLSLLR 199
                 778899********************999766..7***************5.66667889***********************999.88889998887 PP
3B333.29e-11253315773
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                 ++   + + + lp +f+ ++g+ +  + ++tl  +sg +W  +l    k+g++ l++GWk+F++ang
  RrC3187_p2 253 TPEGVRDCKMQLPSQFMWTNGIMS--PGKITLLGRSGMKWFAYL--LSKDGTIALENGWKGFCEANG 315
                 566778899***********8774..458***************..9999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.842141IPR003340B3 DNA binding domain
CDDcd100172.18E-7139No hitNo description
Gene3DG3DSA:2.40.330.101.8E-8146IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-9239IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-9244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-2399205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-24102198IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.849106201IPR003340B3 DNA binding domain
SMARTSM010192.8E-33106201IPR003340B3 DNA binding domain
CDDcd100173.67E-22106199No hitNo description
PfamPF023624.3E-23106199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-11243315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-13245315IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-8246315No hitNo description
SMARTSM010190.15247315IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194247315IPR003340B3 DNA binding domain
PfamPF023623.6E-8251315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTLGDGWKSF VKANGLKTGE SFTLKLNWED TTPVLSLCPS ESNIDSREGG ECSEAMEKEP  60
LPIVPTTNGK EISKEGENSK KESSSWERET NLLKWGDSTI LSQNRFLTLT ITPDSLKHGR  120
LRLPLEFMTE NNMNKPGDIT LLGKDGVKWL VSLLLEKRGR MSLGKGWKDF AKANGLKTGD  180
SITFESIWEN ATPVLSLLRV ESNNDSEVSK QSGSSSGNKT RKAENSREVE TYLEKRRELS  240
SAIQSRIVIL TLTPEGVRDC KMQLPSQFMW TNGIMSPGKI TLLGRSGMKW FAYLLSKDGT  300
IALENGWKGF CEANG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475784.10.0PREDICTED: B3 domain-containing protein REM-like 1 isoform X2
RefseqXP_018475785.10.0PREDICTED: B3 domain-containing protein REM-like 1 isoform X3
RefseqXP_018475786.10.0PREDICTED: B3 domain-containing protein REM-like 1 isoform X4
SwissprotQ8S8E81e-94REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLA0A0D3B7J30.0A0A0D3B7J3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AB291e-180A0A3P6AB29_BRAOL; Uncharacterized protein
STRINGBo3g042160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.16e-82B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]