PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC318_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 163aa    MW: 18208.7 Da    PI: 4.587
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC318_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.92.3e-266106298
     DUF260   2 CaaCkvlrr.kCa..kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                Ca+Ck+     C+  ++C++apyfp+++p kf  v+k+FG  nv k+l++l ++ +re a+++l+yeAear++dP+ G vgv l l+++l++lk++++++
  RrC318_p6   6 CAVCKFAVVgPCTlgNECIMAPYFPSTEPDKFDRVNKVFGILNVYKILRNLeEPWQREYAANALCYEAEARIQDPICGYVGVQLVLENKLNNLKKDIDSA 105
                ******98768985578**********************************55667***************************************99876 PP

     DUF260  98 k 98 
                 
  RrC318_p6 106 L 106
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031956.0E-256104IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089118.1737109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDLPICAVCK FAVVGPCTLG NECIMAPYFP STEPDKFDRV NKVFGILNVY KILRNLEEPW  60
QREYAANALC YEAEARIQDP ICGYVGVQLV LENKLNNLKK DIDSALNELL ITKDKKNQLT  120
RLPDVDAQRN VDEIVGMREN DQGDVHRADG ASTSSGPPNQ NQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-25611012112LOB family transfactor Ramosa2.1
5ly0_B1e-25611012112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479169.11e-116PREDICTED: LOB domain-containing protein 35-like
TrEMBLA0A398ABV91e-75A0A398ABV9_BRACM; Uncharacterized protein
STRINGBo7g108110.17e-73(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.12e-25LOB domain-containing protein 35