PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC318_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 161aa    MW: 17846.2 Da    PI: 5.2811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC318_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26077.22.8e-246107297
     DUF260   2 CaaCkvlrr.kCa....kdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                CaaCk+  +  C+    + C++ap fp+++p kf  v+k+FG+ nv k+l+ l ++ +re a+++l+yeAear++dP++G + + l++ + l++ k +++
  RrC318_p8   6 CAACKFTSNgPCTlgngDTCIMAPFFPSTEPDKFDRVNKVFGVVNVYKILSILeEPLQREYAVNALCYEAEARIQDPIHGNYDLKLAYDNILNKFKRDID 105
                ******98878*8554467**********************************45556******************************999999999887 PP

     DUF260  96 ll 97 
                ++
  RrC318_p8 106 AA 107
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8974111IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-236105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDLAICAACK FTSNGPCTLG NGDTCIMAPF FPSTEPDKFD RVNKVFGVVN VYKILSILEE  60
PLQREYAVNA LCYEAEARIQ DPIHGNYDLK LAYDNILNKF KRDIDAAINE LEIPTDKKNQ  120
LKRLVDARRN AIIGMRENEQ GGVHRADGAS TSSGPANQNQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-22411110111LOB family transfactor Ramosa2.1
5ly0_B4e-22411110111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479170.11e-116PREDICTED: LOB domain-containing protein 32-like
SwissprotO496515e-25LBD32_ARATH; LOB domain-containing protein 32
TrEMBLA0A0D3DFG31e-65A0A0D3DFG3_BRAOL; Uncharacterized protein
STRINGBo7g108110.12e-66(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.12e-27LOB domain-containing protein 32