PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC31996_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 85aa MW: 10041 Da PI: 10.302

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC31996_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.5	1e-12	2	54	37	89
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 l d++g +W+ l+++ +++r+ + +GWk+F kan Lk g+ ++Fkl+++ + RrC31996_p1 2 ALLDKNGVKWSTDLRFEYNGKRIRMIGGWKKFFKANMLKIGEPIMFKLIWDGN 54 689***********99999999999********************9633 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.407	1	64	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-11	1	54	IPR003340	B3 DNA binding domain
CDD	cd10017	2.00E-10	1	58	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.9E-10	2	58	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.18E-12	2	55	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MALLDKNGVK WSTDLRFEYN GKRIRMIGGW KKFFKANMLK IGEPIMFKLI WDGNTIHVPR 60 WKLWALGCEI CEFDVTNSSL KMLLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022573891.1	5e-28	B3 domain-containing protein REM14-like
Swissprot	O23076	6e-13	REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBL	A0A078I8X7	4e-28	A0A078I8X7_BRANA; BnaA04g14550D protein
STRING	Bra032079.1-P	1e-27	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	3e-15	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]