PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3208_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 341aa MW: 39017.4 Da PI: 8.1241

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3208_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	59	112	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+ RrC3208_p3 59 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 112 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.273	55	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-29	55	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-14	57	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	59	114	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	60	111	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MIPSIEGSGN TDREEEEEEE EEEEEDGEGE ESKISSNTTV EAEVNKKTKV RPYVRSKVPR 60 LRWTPDLHLR FVRAVERLGG QERATPKLVR QMMNIKGLSI AHVKSHLQMY RSKKMDDQGQ 120 AIADHRHFME TSTDRNIYKL SQLPMFRGYN MNYNHDSPFR YGSKLSNASL WSSSSHETNR 180 SLIDRPGSIC GSSVSNNIHG SEYLTNNRSF QNNFSSKISN HLPKLRYNHQ ERKNLATFNS 240 IQGHSRAFQK FETGNEERTN HAYCNKTAGK RNASTRIDLD LSLKLRVPEE TVLEETETAA 300 TTTDQTLSLS LCSWKKSRVI KTDEEDRTVK IGQASTLDLT L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-17	60	114	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437061.1	0.0	PREDICTED: myb family transcription factor PHL8
TrEMBL	A0A0D3BQY8	0.0	A0A0D3BQY8_BRAOL; Uncharacterized protein
STRING	Bo4g029640.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-163	G2-like family protein