PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC320_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 367aa    MW: 41543.4 Da    PI: 6.0556
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC320_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073153482154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  RrC320_p1 315 KWPYPTEEDKARLVEETGLQLKQINNWFINQRKR 348
                579*****************************87 PP
2ELK26.91.1e-09269290122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++++++++++++E++
  RrC320_p1 269 ELKHELKQGFKEKIVDIREEIM 290
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-19102146IPR005540KNOX1
PfamPF037901.1E-16105145IPR005540KNOX1
SMARTSM012562.8E-24152208IPR005541KNOX2
PfamPF037912.1E-18159207IPR005541KNOX2
PROSITE profilePS512139.446269289IPR005539ELK domain
PfamPF037892.8E-6269290IPR005539ELK domain
SMARTSM011886.2E-4269290IPR005539ELK domain
PROSITE profilePS5007111.953289352IPR001356Homeobox domain
SuperFamilySSF466899.41E-16291356IPR009057Homeodomain-like
SMARTSM003895.0E-10291356IPR001356Homeobox domain
CDDcd000864.55E-11292348No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24296354IPR009057Homeodomain-like
PfamPF059202.1E-17309348IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009727Biological Processdetection of ethylene stimulus
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSFNSSHLFP PQEEDLPLRH FSDQSHQPPS LLNLPPTTTA TSNSDFTHPH SNGDSPAAAA  60
TNRRWLSFHR EMQNTGEVDP PEVNDAADGE TIHGGEEDWR RASDKAAILK HPMYEQLLAA  120
HVACLRVATP VDQIPRIDAQ LSQLHAVAAK YSSLGVGMDN KELDHFMSHY VVLLCSFKEQ  180
LQHHVCVHAL EAITACWEIE QSLQSVTGVS PSECNGKTMS DDEEDDDIQV ESEANMFDGG  240
LDGSDCMMGF GPLVPTERER SLLERVKKEL KHELKQGFKE KIVDIREEIM RKRRAGKLPG  300
DTTSVLKEWW RTHAKWPYPT EEDKARLVEE TGLQLKQINN WFINQRKRNW NSNSSTSSTL  360
SKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345366RKRNWNSNSSTSSTLSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480250.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A078FKE90.0A0A078FKE9_BRANA; BnaA03g51900D protein
TrEMBLA0A0D3DHB20.0A0A0D3DHB2_BRAOL; Uncharacterized protein
STRINGBo7g115600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5