PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC32112_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 258aa MW: 29498.5 Da PI: 8.4771

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC32112_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.1	2.1e-50	16	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+di+k++PwdLp e+e yfFs+r+ ky++g+r+nr+t sgyWkatg dk++ ++ RrC32112_p1 16 LPPGFRFHPTDEELVVQYLCRKVTGLPLPA-SVIPEIDICKADPWDLPGD---CESERYFFSTREAKYPNGNRSNRSTCSGYWKATGIDKQIGG--KK 107 79**************************.99***********44...46799******************************87..89 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg+kktLvfykg+ p+g++t+Wv+heyrl RrC32112_p1 108 LVGMKKTLVFYKGKPPNGTRTNWVLHEYRL 137 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-58	11	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	16	159	IPR003441	NAC domain
Pfam	PF02365	4.3E-26	17	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MTMEKISSIK SRGLKLPPGF RFHPTDEELV VQYLCRKVTG LPLPASVIPE IDICKADPWD 60 LPGDCESERY FFSTREAKYP NGNRSNRSTC SGYWKATGID KQIGGKKLVG MKKTLVFYKG 120 KPPNGTRTNW VLHEYRLLDS QQESHGENTD WVLCRVFLKK TSNANSNKRK EDEKERKEEK 180 ESDKDDNKSA CPIFYDFLRK DKKRKRCCDL NVTPTCCCCS ASASSSVCSS ALTQTSTHND 240 SDYHEEITCR EIKFCLFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	6e-56	14	162	18	171	NAC domain-containing protein 19
3swm_B	6e-56	14	162	18	171	NAC domain-containing protein 19
3swm_C	6e-56	14	162	18	171	NAC domain-containing protein 19
3swm_D	6e-56	14	162	18	171	NAC domain-containing protein 19
3swp_A	6e-56	14	162	18	171	NAC domain-containing protein 19
3swp_B	6e-56	14	162	18	171	NAC domain-containing protein 19
3swp_C	6e-56	14	162	18	171	NAC domain-containing protein 19
3swp_D	6e-56	14	162	18	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478980.1	0.0	PREDICTED: NAC domain-containing protein 41-like
Swissprot	O22798	1e-113	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A3N6R1Y6	1e-164	A0A3N6R1Y6_BRACR; Uncharacterized protein
STRING	Bo4g181990.1	1e-164	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1806	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-106	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]