PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3218_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 331aa    MW: 36903.2 Da    PI: 8.9344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3218_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l  +++++G+g +W + + + g++R++k+c++rw++yl
       RrC3218_p2 14 RGPWSPEEDSKLRGYIEKYGNGgNWISFPLKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding414.4e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +++  G++ W+ Ia++++ gRt++++k++w++
       RrC3218_p2  69 GDFSEEEDMIIFSLFAAIGSR-WSIIAAHLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.945962IPR017930Myb domain
SuperFamilySSF466891.64E-2612109IPR009057Homeodomain-like
SMARTSM007174.3E-81364IPR001005SANT/Myb domain
PfamPF002498.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-221569IPR009057Homeodomain-like
CDDcd001671.98E-71662No hitNo description
PROSITE profilePS5129422.17563117IPR017930Myb domain
SMARTSM007174.5E-1367115IPR001005SANT/Myb domain
PfamPF002494.6E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001677.38E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRAPCCDKT KVKRGPWSPE EDSKLRGYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSEEEDMIIF SLFAAIGSRW SIIAAHLPGR TDNDIKNYWN TKLRKKLMSS  120
SSSSSSHSSS AMAPPFLNPN SQVVKRPSTT ISPSSYNPYF ENPTKALISN NDCFEADNHQ  180
IFPFVKPNYP QGLSLPESNN NNISATSGFS LNHNMCDYYS NHNSFSSDAS GNRSEIMMKQ  240
EEIMMLMMID NHIDQRTKGY NGDFTQGYYS NYINGHGNLK QMISGTGTNS NINMGGSGSE  300
SASSTSSISN LAENKSSGSL LQHKCLPYFY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468741.10.0PREDICTED: transcription factor RAX1
SwissprotQ9FG681e-162RAX1_ARATH; Transcription factor RAX1
TrEMBLA0A0D3AKN30.0A0A0D3AKN3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DDC70.0A0A3P6DDC7_BRAOL; Uncharacterized protein
STRINGBo2g024590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140131623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23000.11e-159myb domain protein 37
Publications ? help Back to Top
  1. Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
    A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
    Front Plant Sci, 2013. 4: p. 416
    [PMID:24204368]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu YT, et al.
    Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(3): p. 267-79
    [PMID:26646286]