PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3230_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LSD
Protein Properties Length: 131aa    MW: 13599.7 Da    PI: 7.9248
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3230_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD128.91.9e-093853116
     zf-LSD1  1 CggCrtlLsYPrGAps 16
                C+gCr+lL+YP GA+s
  RrC3230_p1 38 CSGCRNLLMYPVGATS 53
                **************98 PP
2zf-LSD1474.1e-156690125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+tlL+Y rGA+sV+C++C+tV
  RrC3230_p1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
                ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF486952.21E-56107IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.106.7E-532108No hitNo description
TIGRFAMsTIGR010539.3E-93553IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-63853IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.3E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-5101119IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-4104119IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MPVPLAPYPT PPAQPLAPPY TPPPPANGST GGQSQLVCSG CRNLLMYPVG ATSLPNAGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGSCKML LMYQYGAKSG  120
STSTTDQKLN N
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1932953e-90AB193295.1 Brassica rapa BrLOL1 mRNA for LSD-One-Like 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638467.16e-76PREDICTED: protein LOL1
SwissprotQ93ZB11e-59LOL1_ARATH; Protein LOL1
TrEMBLA0A0D3CGN51e-74A0A0D3CGN5_BRAOL; Uncharacterized protein
STRINGBo5g087050.12e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-60lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]