PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3232_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 241aa    MW: 28221.6 Da    PI: 6.6363
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3232_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91.1e-13126184462
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  k+ +r+++NRe+A+rsR RK+  i +L++ v +L+ eN++Lk++l+  + + +++ ++
  RrC3232_p2 126 EKKRKRMESNRESAKRSRMRKQSHINNLRNQVNQLDMENRELKNRLQLFTYQLQRVNTH 184
                 6999******************************************9998888776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.5E-13117181No hitNo description
SMARTSM003384.3E-14123187IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.415125188IPR004827Basic-leucine zipper domain
PfamPF001703.7E-11126177IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-11127180No hitNo description
CDDcd147021.82E-17128173No hitNo description
PROSITE patternPS000360130145IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSEPGLVNQF SGFQTGFTPW EWDSSDLFPV NQLSLEPAVP SPCYGESDSG LIKINSCFGD  60
IKTGSDEKHT GFNKTEPGFD EVHSSHGVPD EPDSDDPKQW TAIANFDSGE QNHNRTKLIQ  120
PEMTEEKKRK RMESNRESAK RSRMRKQSHI NNLRNQVNQL DMENRELKNR LQLFTYQLQR  180
VNTHNIQLVA EQDILRLRLS EMRRFLMIRQ LQQQQQWELN NRRMVMTEQN PSSIIDHMIY  240
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144KRSRMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480866.11e-164PREDICTED: LOW QUALITY PROTEIN: basic leucine zipper 34
TrEMBLA0A3N6RPC91e-158A0A3N6RPC9_BRACR; Uncharacterized protein
STRINGBo7g118720.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-102basic leucine-zipper 7