PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3265_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24285.5 Da    PI: 7.8178
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3265_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.5e-225098149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs   ++y +
  RrC3265_p1 50 KEIKEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCERIYAF 98
                6799**************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.18942102IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-2642101IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-2343110IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-204464IPR002100Transcription factor, MADS-box
PfamPF003199.5E-225298IPR002100Transcription factor, MADS-box
CDDcd001204.66E-215699No hitNo description
PRINTSPR004046.6E-206479IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-2079100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEDGEASSTA CFRFKEQKPM QNPKLTPKQR KETKQQNPKT TKGRQKIEIK EIKEENRRQV  60
TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN VNTLIESYLR KTPVMLRSHY  120
GGDVATGGAD GDGRMWWERE VESVPEEEMD EYMKGLNGLR ENLWARICEM GGDPTVQVNA  180
QVCEDLMAPV NWKMTDENLT VRSDQGQAGY DGY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895750.0AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443510.11e-157PREDICTED: agamous-like MADS-box protein AGL15
RefseqXP_018443511.11e-157PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A078IML81e-134A0A078IML8_BRANA; BnaC06g24370D protein
TrEMBLA0A0D3CX451e-134A0A0D3CX45_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QC051e-134A0A3N6QC05_BRACR; Uncharacterized protein
TrEMBLA0A3P6FXM61e-134A0A3P6FXM6_BRAOL; Uncharacterized protein
STRINGBo6g091550.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.15e-64M-type_MADS family protein