PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC32793_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

EIL

Protein Properties

Length: 285aa MW: 31828.5 Da PI: 4.3895

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC32793_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	29.5	1.3e-09	1	103	238	326
--SHHHHHHHHHHTTTTT-S--XXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXX.X...XXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 238 msakesfallsvlnqeekecatvsahss............slrkqspkvtlsceqkedvegkkeskik...hvqavkttagfpvvrkrkkkpsesakv 320 m+akes+++l+vlnqee+++++ s++ + + +++k+++++++++dv+g++e + + ++q v+ +++++ +++rk+++s++++ RrC32793_p1 1 MTAKESAIWLAVLNQEESLIQQHSSDDNgtsnvteihrrgDNNAERRKTVVNSDSDYDVDGTEEASGSvtaSSQPVRDQDKAEKHQRRKRPRSRKEA- 97 99********************9944456788876665444589999999999***7777665521145555555677777777755555544. PP XXX... CS EIN3 321 sskevs 326 ++++++ RrC32793_p1 98 EQRNII 103 444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTAKESAIWL AVLNQEESLI QQHSSDDNGT SNVTEIHRRG DNNAERRKTV VNSDSDYDVD 60 GTEEASGSVT ASSQPVRDQD KAEKHQRRKR PRSRKEAEQR NIIHDMNHVD APMLEHNING 120 THHHDEGVLE PNIALGAEEN SREVMVLEFD NNYTYLPPVN GQTMMPVDER PMLYGPNPNQ 180 ELQFGSGYSF YNPSAVFVHN QEEVLIEMNA QAPPHNNGSE ASVGVLQPHG LHEDGVAGRD 240 LPPQFQSDSN ILSPFNELAA FESSTFYSGF DSYGAFDDDF SWFGA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460141.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_018460142.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	1e-118	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A078J8L3	1e-152	A0A078J8L3_BRANA; BnaA07g39030D protein
TrEMBL	A0A397YRJ1	1e-152	A0A397YRJ1_BRACM; Uncharacterized protein
TrEMBL	A0A3P6BXU7	1e-152	A0A3P6BXU7_BRACM; Uncharacterized protein
STRING	Bra015970.1-P	1e-153	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4658	25	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-120	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]