PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3287_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 310aa    MW: 34484.9 Da    PI: 9.8343
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3287_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.11.2e-37108204297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 
                  fqr+ws eDei++LqG+i+fk+ktg+sp+dd +a+y++vkks+sf+v+k+q++eKir LKkKf+++  k +k+gk+psfsk+ d  +f+l+k +Wg
  RrC3287_p4 108 SFQRVWSGEDEIAVLQGIINFKNKTGSSPYDDKNALYDMVKKSVSFDVTKTQFMEKIRALKKKFENNLGKgKKKGKDPSFSKAVDLRAFDLAKLVWG 204
                 79*******************************************************************98899**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-32109204IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSGKLLKKLE DPPMASSSSE EENEDTLANA SSPEEEATDS DSESEAEPVA NPPVKPPADS  60
KKVETSSKPE TKKRSSDKNE GKAKRVKRVS GEDNKKKSTV EEETKKNSFQ RVWSGEDEIA  120
VLQGIINFKN KTGSSPYDDK NALYDMVKKS VSFDVTKTQF MEKIRALKKK FENNLGKGKK  180
KGKDPSFSKA VDLRAFDLAK LVWGDNGIMA LESSSAGKSR KVEASVKKKE EEPAVVMKQE  240
FVSVVESVAR FGVDDVAAKQ GWSRLSSEDK ERFEKQWKAL KLKEFKFYSQ KSGFIHEVVT  300
KMAEASGPKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481209.10.0PREDICTED: probable transcription factor At1g11510
SwissprotC0SUU64e-64STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLA0A0D3C0N81e-150A0A0D3C0N8_BRAOL; Uncharacterized protein
STRINGBo4g143830.11e-150(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.12e-41DNA-binding storekeeper protein-related transcriptional regulator