PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3291_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19918.2 Da    PI: 5.0613
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3291_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.35.5e-15451350
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +e++  r +tfskR++gi KK +E+   Cd+e+a+++fs+ gk +++ 
  RrC3291_p2  4 VEDYEDRMTTFSKRKAGISKKLNEIVAQCDVEAALLVFSQAGKPHTFT 51
                79999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.572154IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-10153IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-17269IPR002100Transcription factor, MADS-box
PfamPF003194.8E-17450IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MREVEDYEDR MTTFSKRKAG ISKKLNEIVA QCDVEAALLV FSQAGKPHTF THPSMEVAVG  60
RVKSHLRNEL SGKDDTNTAG SLVEAYKRQK NEELKKCFVD LAKELEMEEE KEKQLRESKS  120
EKKLEEKWWN DEGSSVEELK QMHQNFVELN VSLCGSASQE KDGDGSSSDL AGRGYP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435277.11e-113PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A078JXZ94e-69A0A078JXZ9_BRANA; BnaCnng72100D protein
TrEMBLA0A0D3AFP24e-69A0A0D3AFP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G7J24e-69A0A3P6G7J2_BRAOL; Uncharacterized protein
STRINGBo1g152200.17e-70(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-38AGAMOUS-like 57