PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3297_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 200aa    MW: 22292.3 Da    PI: 7.1603
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3297_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.5e-2088122135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C tt+TplWR+gp g+k+LCnaCG++++k+++
  RrC3297_p1  88 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 122
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.46882118IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-1382122No hitNo description
SMARTSM004012.9E-1982134IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-1786122IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.41E-1487119No hitNo description
PROSITE patternPS00344088113IPR000679Zinc finger, GATA-type
PfamPF003201.7E-1788122IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MMEYQTNANF SMFYDQDHPH YDYDDLSSST SVDCTLSLGT PSTRVNEHRR FSSANSNNLS  60
GDFFFHGGSA KTMSYKKSGS EHNLPRRCAS CDTTSTPLWR NGPKGPKSLC NACGIRFKKE  120
ERRAAARNSI TSVGGSSVAE VPTENPYNGG GNYYSHQYYA SSPPSWAHQN TQRVQYFSPA  180
PEIEYPFVDD VTAASFLSWN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454800.11e-149PREDICTED: GATA transcription factor 20-like
SwissprotQ9ZPX01e-105GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A3N6SN891e-135A0A3N6SN89_BRACR; Uncharacterized protein
STRINGBo9g026020.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.14e-96GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]