PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3310_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 321aa    MW: 36593.1 Da    PI: 6.8994
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3310_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573842.1e-2699190498
      DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 +rl+se+DeivlLq +id    +gk+p +d   +yef+k+s+s +v+ +q+ eK++++++K+ +k+ +  +++  s s++h+qk f+lsk iWg+
  RrC3310_p6  99 RRLFSEKDEIVLLQSIIDS---KGKKPLEDRRSLYEFIKGSLSNDVTLRQFKEKLQSMRRKYITKEMRGTDEEADSASNPHQQKFFQLSKAIWGT 190
                 79****************8...8999******************************************9999999******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.7E-2399189IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MHTSMANNLK HPLEDPPSLS SSASDFLFIS SSEEEDEEEN QHTTFSSDEG EPEDPPLRSS  60
SEAKLPGRKL RSGGISTNVS SKRAKKMNIQ GEKIGSDHRR LFSEKDEIVL LQSIIDSKGK  120
KPLEDRRSLY EFIKGSLSND VTLRQFKEKL QSMRRKYITK EMRGTDEEAD SASNPHQQKF  180
FQLSKAIWGT EGIAFESANG KSKESKRRRV TKKLDLLVSP SNGNNPQDGS TRGDMEKSPH  240
AEKKPDWNEN SFFLGMDFLR EKWTKLPTET RKETQEKMKK LHASELECLK FEEMLKAMKD  300
KCANDKVELL NEVTSLIMEV D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.11e-153PREDICTED: mediator-associated protein 1-like
TrEMBLA0A3P6CNB01e-135A0A3P6CNB0_BRACM; Uncharacterized protein
TrEMBLM4EH401e-135M4EH40_BRARP; Uncharacterized protein
STRINGBra028105.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.11e-42DNA-binding storekeeper protein-related transcriptional regulator