PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC33195_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 122aa MW: 12846.9 Da PI: 4.0595

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC33195_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	77.5	1.8e-24	77	122	3	49
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCH 49 ++r++eClkN+A+++GghavDGCg+fmp+ g egt++alkCaACgCH RrC33195_p1 77 RFRFRECLKNQAVNIGGHAVDGCGDFMPA-GIEGTIEALKCAACGCH 122 789***********************9.999************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.7E-21	78	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.9E-22	79	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.392	80	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-17	82	122	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MDFAENNNNE EEEEMNLHEE EEEEEEDDAV YDSPPLHPPS RVLKTTTVSP DTAGTTSTGG 60 GGFMVVHGGS SGGGGSRFRF RECLKNQAVN IGGHAVDGCG DFMPAGIEGT IEALKCAACG 120 CH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130511.1	3e-51	PREDICTED: zinc-finger homeodomain protein 1-like
Refseq	XP_013722360.1	3e-51	zinc-finger homeodomain protein 1
Swissprot	Q9FKP8	7e-42	ZHD1_ARATH; Zinc-finger homeodomain protein 1
TrEMBL	A0A078IX67	6e-51	A0A078IX67_BRANA; BnaA09g52500D protein
STRING	Bra031859.1-P	1e-50	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65410.1	6e-26	homeobox protein 25

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]