PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3343_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 182aa    MW: 20715.3 Da    PI: 9.8481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3343_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-2058107355
         AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ykGVr+++ +g+++AeIrdp   + k +r +lg++ t+eeAa a+++a+ k++g
  RrC3343_p1  58 YKGVRRRP-WGKYAAEIRDP---NkKGTRMWLGTYETPEEAAVAYDQAAFKMRG 107
                 9*******.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.99957115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-3357116IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2457116IPR016177DNA-binding domain
SMARTSM003803.1E-3857121IPR001471AP2/ERF domain
CDDcd000181.36E-3058117No hitNo description
PfamPF008472.5E-1458107IPR001471AP2/ERF domain
PRINTSPR003673.1E-135869IPR001471AP2/ERF domain
PRINTSPR003673.1E-1397117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGKHSCNNG SAVLDWIRRE LLEEDDIDMD LTPSTTLATD SSSSSEDVPV VPRRGATYKG  60
VRRRPWGKYA AEIRDPNKKG TRMWLGTYET PEEAAVAYDQ AAFKMRGSKA KLNFPHLISS  120
RPHEAEEVTH CGNKRQRSQE HNRDPVVAKR RNNINIINKT ARLPSLGLKS VFKNTYDDFM  180
RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2854120268ATERF1
3gcc_A4e-2854120268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453926.11e-136PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A3N6QHF87e-95A0A3N6QHF8_BRACR; Uncharacterized protein
STRINGBo9g001020.11e-77(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-36ethylene-responsive element binding factor 13