PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3356_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 100aa    MW: 10756.4 Da    PI: 8.5034
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3356_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.81.4e-361199188
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                +C aCk+lrrkC+++Cv+apyf ae+ +++fa+vhk+FGasn +kll  +p ++r++a+++l yeA ar+rdPvyG+vg+i++lq+ql 
  RrC3356_p1 11 PCGACKFLRRKCVAECVFAPYFDAEEgTAHFAAVHKVFGASNTSKLLLMIPANRRPEAVATLSYEALARLRDPVYGCVGHIFALQHQLT 99
                7*********************999879**********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.36610100IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-361199IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSGSTTSGGS PCGACKFLRR KCVAECVFAP YFDAEEGTAH FAAVHKVFGA SNTSKLLLMI  60
PANRRPEAVA TLSYEALARL RDPVYGCVGH IFALQHQLTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-35498497LOB family transfactor Ramosa2.1
5ly0_B1e-35498497LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465751.17e-68PREDICTED: LOB domain-containing protein 31 isoform X2
SwissprotO813224e-57LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A078JPX17e-65A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBLA0A291LR227e-65A0A291LR22_BRARR; Transcription factor LBD31
TrEMBLA0A3P5XT757e-65A0A3P5XT75_BRACM; Uncharacterized protein
TrEMBLM4F8B07e-65M4F8B0_BRARP; Uncharacterized protein
STRINGBra037322.1-P1e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-54LOB domain-containing protein 31