PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC335_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 193aa MW: 21616.9 Da PI: 7.6539

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC335_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.8	9.1e-28	101	159	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk++++ r+YY+C+s+gC+vkk+ver+ e+ +v++tYeg Hnhe RrC335_p2 101 MDDGYKWRKYGKKSVKNNTNKRNYYKCSSEGCMVKKRVERDGENAAYVITTYEGVHNHE 159 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-30	88	161	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	93	161	IPR003657	WRKY domain
PROSITE profile	PS50811	28.874	96	161	IPR003657	WRKY domain
SMART	SM00774	1.5E-31	101	160	IPR003657	WRKY domain
Pfam	PF03106	3.8E-22	102	159	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MNPSQSPSPN FTFLSDEKSI YPFMDKYDFS SLMFDVGEGG NNGLIQEEPS SPTTIVTGES 60 GGSGSALTTL SKKESTGSKD GEKKEMGHRV AIRTRSQIDV MDDGYKWRKY GKKSVKNNTN 120 KRNYYKCSSE GCMVKKRVER DGENAAYVIT TYEGVHNHES PSHVYYSDMV LSFDHDNPSQ 180 HSLLRSIQKF PPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	91	162	7	78	Probable WRKY transcription factor 4
2lex_A	1e-23	91	162	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430060	1e-148	KF430060.1 Brassica rapa WRKY transcription factor 51 (WRKY51) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437665.1	1e-135	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	1e-101	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A078H0L5	1e-121	A0A078H0L5_BRANA; BnaA02g34400D protein
TrEMBL	M4ESX0	1e-121	M4ESX0_BRARP; Uncharacterized protein
TrEMBL	V5RF86	1e-121	V5RF86_BRACM; WRKY transcription factor 51
STRING	Bra031900.1-P	1e-122	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	7e-93	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]