PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC33619_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 150aa    MW: 16441.4 Da    PI: 8.4934
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC33619_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.61e-2047138187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                  +W+ +e+ aLi+a+ ++ ++l+rg+lk+ +Weev++++  +  g+  +++++qC++k+e+l++ry+++ +++++   ++ +s++++++++ea
  RrC33619_p1  47 CWSLEETTALIDAYGDKRRDLGRGSLKADHWEEVAEAVaaACPGVtpRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVHYKRMEA 138
                  7*************************************77444554478*************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.009944110IPR001005SANT/Myb domain
PfamPF138373.0E-2046138No hitNo description
PROSITE profilePS500906.14448108IPR017877Myb-like domain
SMARTSM005954.8E-955144IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSDPDSPSNH DPSPSPPPQA LLPSTADPKT ESVPATSKSS RRLPPPCWSL EETTALIDAY  60
GDKRRDLGRG SLKADHWEEV AEAVAAACPG VTPRKTAVQC RHKMEKLRQR YRAEIQRARS  120
VPVARFVSSW VHYKRMEATE NDDGGGGPTP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464254.13e-94PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A078IGG75e-66A0A078IGG7_BRANA; BnaC04g05120D protein
TrEMBLA0A3N6SPB46e-66A0A3N6SPB4_BRACR; Uncharacterized protein
STRINGXP_010506405.14e-66(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-55Trihelix family protein