PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC33624_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 182aa MW: 20661.6 Da PI: 10.0142

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC33624_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.9	5.7e-29	52	106	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++Y eC+kNhA+s+Ggh+vDGC+Efmp geegt +al CaAC CHR+FHR ev+ RrC33624_p1 52 ETKYMECQKNHAVSTGGHVVDGCCEFMPG-GEEGTLSALSCAACSCHRSFHRNEVS 106 689***********************9.999*****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.8E-27	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.5E-26	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-21	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.134	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.7E-9	152	180	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEHGRKCNAI TSTTEPHTNP DPEGAKPGSD LSLLPFLVKK ENQKPRTRGD HETKYMECQK 60 NHAVSTGGHV VDGCCEFMPG GEEGTLSALS CAACSCHRSF HRNEVSRRRN STQEELISPA 120 FYRSGSLYKA MIQPRGVYQK QRVNENGLMI IRKKKRVRTK INEEQKEKMK GFAERLGWRI 180 LK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433718.1	1e-125	PREDICTED: zinc-finger homeodomain protein 7-like
Swissprot	Q9SVL0	4e-67	ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBL	A0A397XZJ4	4e-88	A0A397XZJ4_BRACM; Uncharacterized protein
TrEMBL	M4F6Z2	4e-88	M4F6Z2_BRARP; Uncharacterized protein
STRING	Bra036852.1-P	7e-89	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13854	15	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50890.1	2e-66	homeobox protein 28