PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC33717_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 157aa    MW: 18620.3 Da    PI: 7.2093
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC33717_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.22.1e-12913410128
          NAM  10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                  +de++v  +L++kv+g  +   +  ++++  d+yk ePw Lp+        + +ew +  krd ky +   ++ +  +g W      ++++s+ +gel
  RrC33717_p1   9 SDEDMVEGFLRPKVNGAATANPRYiVDNMeeDVYKREPWLLPQptD--PilNPNEWLYLGKRDWKYLS---AEGVDCEGSWMPVEGRRRIMSEdSGEL 101
                  7***************9955544424443449*********96332..233778************75...4555668****9999999999866667 PP

          NAM 100 vglkktLvfy....kgrapkgektdWvmheyrl 128
                  +g    + +     + ++     ++W+m eyrl
  RrC33717_p1 102 IGGTMRFRYCfrnkNDKSTPMDWSNWFMREYRL 134
                  776666666554422233334589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.2511154IPR003441NAC domain
PfamPF023653.2E-64134IPR003441NAC domain
SuperFamilySSF1019411.06E-209152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAEVRCRISD EDMVEGFLRP KVNGAATANP RYIVDNMEED VYKREPWLLP QPTDPILNPN  60
EWLYLGKRDW KYLSAEGVDC EGSWMPVEGR RRIMSEDSGE LIGGTMRFRY CFRNKNDKST  120
PMDWSNWFMR EYRLCDKFGN PIRTRHVLCK ITCYPHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459009.11e-108PREDICTED: NAC transcription factor 29
RefseqXP_018459010.11e-108PREDICTED: NAC transcription factor 29
TrEMBLA0A397ZK761e-105A0A397ZK76_BRACM; Uncharacterized protein
STRINGXP_006292493.16e-80(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.12e-57NAC domain containing protein 27