PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3376_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 235aa MW: 26678 Da PI: 6.1539

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3376_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	136.9	1.3e-42	6	136	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + GfrF Pt++elv +yL++++eg++ ++++vi+ +d+++veP++Lp+ +++++ ++w+fF++r++++a+g r++r+t sgyWkatg+ +v+sk RrC3376_p1 6 TIGFRFYPTEDELVAFYLRNQLEGRSdDSMHRVIPVLDVFEVEPSHLPNvageRCRGDAEQWFFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVISK 104 68*********************95555677***********646666666888*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++ +g+kkt+vfy+g+ap+g+kt+W m+ey+ RrC3376_p1 105 DNRMIGVKKTMVFYTGKAPTGRKTKWKMNEYK 136 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-46	4	162	IPR003441	NAC domain
PROSITE profile	PS51005	46.747	5	162	IPR003441	NAC domain
Pfam	PF02365	6.5E-23	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MAEELTIGFR FYPTEDELVA FYLRNQLEGR SDDSMHRVIP VLDVFEVEPS HLPNVAGERC 60 RGDAEQWFFF VPRQEREARG GRPSRTTGSG YWKATGSPGP VISKDNRMIG VKKTMVFYTG 120 KAPTGRKTKW KMNEYKAIDE TVITSTIPKL RHEFSLCRVY ITSGSSRAFD RRPVGSFQTE 180 RMLTSDVGVA ETSFRVGSSP ETSMSGGEHV DLSVNTEMVD ALTEPMWEWE QLNWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-33	5	167	20	173	NAC domain-containing protein 19
3swm_B	4e-33	5	167	20	173	NAC domain-containing protein 19
3swm_C	4e-33	5	167	20	173	NAC domain-containing protein 19
3swm_D	4e-33	5	167	20	173	NAC domain-containing protein 19
3swp_A	4e-33	5	167	20	173	NAC domain-containing protein 19
3swp_B	4e-33	5	167	20	173	NAC domain-containing protein 19
3swp_C	4e-33	5	167	20	173	NAC domain-containing protein 19
3swp_D	4e-33	5	167	20	173	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175806	0.0	AK175806.1 Arabidopsis thaliana mRNA for NAC-domain protein-like, complete cds, clone: RAFL22-40-G20.
GenBank	AY086944	0.0	AY086944.1 Arabidopsis thaliana clone 29829 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018471145.1	1e-173	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-154	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D3AKG1	1e-167	A0A0D3AKG1_BRAOL; Uncharacterized protein
STRING	Bo2g023870.1	1e-168	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-146	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]