PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3378_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 200aa    MW: 22482.7 Da    PI: 3.7709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3378_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-154441255
         AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a+k+++g
  RrC3378_p1  4 WGKWVAEIREP---N-RvSRLWLGTFPTAEEAASAYDEAAKAMYG 44
                9*********8...2.58************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-26158IPR001471AP2/ERF domain
CDDcd000188.49E-28154No hitNo description
PROSITE profilePS5103219.151152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-26153IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-17253IPR016177DNA-binding domain
PfamPF008477.2E-10444IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
QRVWGKWVAE IREPNRVSRL WLGTFPTAEE AASAYDEAAK AMYGLSARLN FPQQCVVGSE  60
FLASTLSQSE VCSVEDKPVL GGDVCVTRMS SDLLDEFDEE YWGRVSEEIE KSMEEGEEEV  120
LTVADYGWCN DMLNEQDLWD PNEVFDVDEL LGDMDECIML TGGGPDEDQN RIHPGGCDPH  180
PLQLEPHNGH EFFDLTSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-141592079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436576.11e-123PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821335e-65DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A398AYM31e-116A0A398AYM3_BRACM; Uncharacterized protein
STRINGBra034159.1-P1e-115(Brassica rapa)
STRINGBo1g141310.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.13e-56DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]