PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC33943_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 261aa    MW: 28517.8 Da    PI: 7.276
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC33943_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.2e-10192249562
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+  +  l  +
  RrC33943_p1 192 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDANGLSVQ 249
                  9********************************************9999888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-13188252IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473190253IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-11192247No hitNo description
PfamPF001704.4E-9192244IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-10192245No hitNo description
CDDcd147031.15E-23193242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDKEKSPAPC GGRLPPPSPS GRCSPFSDMS RMLEHPPKKI GHRRAHSEIL LTLPDDLSFD  60
FDLGLVGNGS GTNADVPSFS DDTEGGGDLL SMYLDMDKFN TSTATSSSAA QVGEPSGTAW  120
KNESVTVTHT GSTSSNHQNS SFGERPRVRH QHSHSMDGSL SISEMLMSGN EDDAKKSMSA  180
AKLAELALID PKRAKRIWAN RQSAARSKER KTRYIFELER KVQTLQTEAT TLSAQLTLLQ  240
RDANGLSVQN NELKLRLQTM E
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410269.11e-142probable transcription factor PosF21
RefseqXP_006410270.11e-142probable transcription factor PosF21
SwissprotQ040881e-139POF21_ARATH; Probable transcription factor PosF21
TrEMBLE4MXN61e-140E4MXN6_EUTHA; mRNA, clone: RTFL01-24-D07
TrEMBLV4M9E91e-140V4M9E9_EUTSA; Uncharacterized protein
STRINGXP_006410269.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.51e-103bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]