PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3417_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YC
Protein Properties Length: 164aa    MW: 18760.7 Da    PI: 6.3792
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3417_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC117.94.6e-3733130298
       NF-YC   2 lksfwekqiekatdfk..nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                 lk+fw +q ++ +     n  lPl+++kkilk+d++v+ is +aP+l+skace++il+ltlr+w+h+++++r+t++++d++ av++++++ fl+d vp 
  RrC3417_p1  33 LKVFWDNQWDQLQYSTgfNCCLPLSKVKKILKSDPKVR-ISRDAPALFSKACEYLILDLTLRAWMHTQSCTRQTIQHCDVFHAVKNSETHYFLIDLVPF 130
                 89******8887655545999****************7.9*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.49E-2243134IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-2354129IPR009072Histone-fold
PfamPF008082.0E-1354115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEPVAPYSHS MMEIPYHTST SNTEALSSLD AVLKVFWDNQ WDQLQYSTGF NCCLPLSKVK  60
KILKSDPKVR ISRDAPALFS KACEYLILDL TLRAWMHTQS CTRQTIQHCD VFHAVKNSET  120
HYFLIDLVPF GPYCAIHQTV LPPVKMILPD MNVAIDMDQI EQVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-2340129394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482400.11e-116PREDICTED: nuclear transcription factor Y subunit C-10
SwissprotQ58CM86e-72NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLV4LXI02e-76V4LXI0_EUTSA; Uncharacterized protein
STRINGXP_006405799.13e-77(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.13e-74nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]