PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3429_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 87aa MW: 9592.14 Da PI: 11.7993

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3429_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.7	8e-31	35	84	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ RrC3429_p1 35 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQ 84 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.533	31	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-27	31	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-23	35	86	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.58E-14	35	85	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-8	36	84	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MGKAAGRNGD GNYNGVGFNG HRGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDMLGGQHRA 60 TPKLVLKMMD VKGLTISHVK SHLQVRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	36	84	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	36	84	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	36	84	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	36	84	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	36	84	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436921.1	1e-57	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Swissprot	Q700D9	1e-33	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078F8F8	2e-52	A0A078F8F8_BRANA; BnaA02g26180D protein
TrEMBL	A0A398AHD6	2e-52	A0A398AHD6_BRACM; Uncharacterized protein
TrEMBL	M4ECV8	2e-52	M4ECV8_BRARP; Uncharacterized protein
STRING	Bra026618.1-P	3e-53	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	8e-40	G2-like family protein