PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3454_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 292aa    MW: 32995 Da    PI: 9.49
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3454_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind295.22.7e-9012911300
   GAGA_bind   1 mdddgsre..rnkg.yye....................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76 
                 m+++g++e  r  + yy+                    ++++l   +++++ms++aerda+++er+ al++k++a+a+rd+a  qrdkal+ r++a++e
  RrC3454_p3   1 MESSGQYEseRYNPdYYKegthtvwntmpnhhhqakedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAARDEAIDQRDKALSLRDNAILE 97 
                 77778777778888888899999999999998888665556676..99*************************************************** PP

   GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseksk 175
                 rd++l al+++e++l+  l       s +k    +q+               ++  +  p+++ ++ea   +++k     ++ k+ k++k k+ +e+ +
  RrC3454_p3  98 RDSALSALQFREHNLNYIL-------SRAKL-GASQT---------------SHLPNPSPLSTIPHEAAAPSRRK-----RNRKQDKRSKGKRVGEDLN 168
                 *************955443.......22222.22222...............12223345566555555444444.....4556677777788888999 PP

   GAGA_bind 176 kkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                 ++ ++++  ++ +++++s d++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S+yPLP+++++r++R++grKmS+++f++lL++La+
  RrC3454_p3 169 HQLASPG--KKCRKDWDSNDVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAG 265
                 9999999..579*************************************************************************************** PP

   GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvti 300
                 eG+dls pvDLkd+WA+HGtn+++ti
  RrC3454_p3 266 EGHDLSSPVDLKDYWARHGTNRYITI 291
                 *************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.2E-1291292IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-8922291IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MESSGQYESE RYNPDYYKEG THTVWNTMPN HHHQAKEDQH NALVMNQKIM SILAERDAAL  60
KERDDALAAK QEALAARDEA IDQRDKALSL RDNAILERDS ALSALQFREH NLNYILSRAK  120
LGASQTSHLP NPSPLSTIPH EAAAPSRRKR NRKQDKRSKG KRVGEDLNHQ LASPGKKCRK  180
DWDSNDVGLN LVTFDETTMP VPMCTCTGTA RHCYKWGNGG WQSSCCTTTL SQYPLPQMPN  240
KRHSRVGGRK MSGNVFSRLL SRLAGEGHDL SSPVDLKDYW ARHGTNRYIT IM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153RRKRNRKQ
2146156RRKRNRKQDKR
3155161KRSKGKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895210.0AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470464.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018470465.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018470466.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018470467.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018470468.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-158BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLM4D5X90.0M4D5X9_BRARP; Uncharacterized protein
STRINGBra011886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-149basic pentacysteine 5