PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3475_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 87aa    MW: 9808.29 Da    PI: 10.7286
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3475_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB86.14e-273987149
       NF-YB  1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse 49
                vreqdrflPian+srimk+ lPan+ki+kdaket+qecvsefisfvtse
  RrC3475_p5 39 VREQDRFLPIANISRIMKRGLPANGKIAKDAKETMQECVSEFISFVTSE 87
                69*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.36E-172087IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.3E-253587IPR009072Histone-fold
PfamPF008081.2E-164587IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MLFLTPLIDC RRWRIRRRIG GGGGSHESGG DQSPRSMNVR EQDRFLPIAN ISRIMKRGLP  60
ANGKIAKDAK ETMQECVSEF ISFVTSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-223987149Transcription factor HapC (Eurofung)
4g92_B7e-223987149Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876726e-94KC787672.1 Brassica napus transcription factor subunit NF-YB10 (NF-YB1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602375.11e-41PREDICTED: nuclear transcription factor Y subunit B-10 isoform X3
SwissprotQ8VYK42e-38NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A397Y0305e-40A0A397Y030_BRACM; Uncharacterized protein
STRINGBra006991.1-P8e-41(Brassica rapa)
STRINGBo8g082690.11e-40(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2606233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-39nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]