PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3493_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 258aa    MW: 29389.9 Da    PI: 8.7871
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3493_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.88.1e-3232140197
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k ltpsdv+k++rlv+pk++ae+h             + +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L +gD+v F++++ 
  RrC3493_p1  32 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnasddvaaAETTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLHAGDVVFFQRHRF 130
                 99*******************************99999777889***************************************************5432 PP

                 SEE..EEEEE CS
          B3  88 sefelvvkvf 97 
                 +  + +++++
  RrC3493_p1 131 DLHRVFIGWR 140
                 5555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-4126151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3229144IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-2931136No hitNo description
PROSITE profilePS5086313.0732141IPR003340B3 DNA binding domain
PfamPF023626.6E-2932141IPR003340B3 DNA binding domain
SMARTSM010197.5E-2332143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSGNCYPREI HHTTPSLHHR QNDAVVDREY LFEKSLTPSD VGKLNRLVIP KQHAEKHFPL  60
NNASDDVAAA ETTEKGMLLS FEDESGKCWK FRYSYWNSSQ SYVLTKGWSR YVKDKHLHAG  120
DVVFFQRHRF DLHRVFIGWR KRGEVSSPSA VSVVSQDARV NTTTYWSNGL TTPYRQVHAS  180
TSSYPNIHQE YSHYGAVAET PTVVAGSSRT VRLFGVNLEC HGDVAEPPAC PDGYSGQQFY  240
YYSTPHPMPS MILMKKIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48251451116B3 domain-containing transcription factor NGA1
5os9_B2e-48251451116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439250.10.0PREDICTED: B3 domain-containing protein At3g11580-like isoform X2
SwissprotQ8RYD31e-127Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A398AUU71e-168A0A398AUU7_BRACM; Uncharacterized protein
TrEMBLM4FIU41e-168M4FIU4_BRARP; Uncharacterized protein
STRINGBra041023.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-128B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]