PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC351_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 334aa    MW: 36750.5 Da    PI: 4.0052
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC351_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322.1e-10242284853
                -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                t+  +++L e F++nryp+ ++re LAk+l++t   V++WF N R 
  RrC351_p3 242 TNPKTQRLFESFHENRYPDVTTRENLAKELQMT---VSNWFRNTRF 284
                6678999************************98...899****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.875232289IPR001356Homeobox domain
SMARTSM003897.7E-4233293IPR001356Homeobox domain
PfamPF000465.4E-8242284IPR001356Homeobox domain
SuperFamilySSF466896.42E-10242287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-9243292IPR009057Homeodomain-like
CDDcd000861.30E-8246283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGGGSQNLD CDLPSDDSED EEYDPDGLND AEGDGDGSDD SDDDESENED GSSDESASDD  60
DDYDPDAPTL DEEDKMQESS NSDDSDSEDV ETSSKGDESD QQDKVTPRGK QGRNKAQLSD  120
VSISETDAGI GDDVPGRRKV ERLDYKKLYD EEYENVPTSS SDDEDWDKVA GKEDSESADE  180
GDTVPLEQPS KAEDHTPAQK PTQKPKREYK KATLIAPQET PPPRENGCCS VEKSSSASSK  240
QTNPKTQRLF ESFHENRYPD VTTRENLAKE LQMTVSNWFR NTRFSTSKTM SSKEDVETSV  300
AGSSKQAMET EPIAENKNGA AESTSTGSRK RRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135142GRRKVERL
2328332RKRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486856.11e-174PREDICTED: homeobox protein HAT3.1-like isoform X1
RefseqXP_018486857.11e-174PREDICTED: homeobox protein HAT3.1-like isoform X1
RefseqXP_018486858.11e-174PREDICTED: homeobox protein HAT3.1-like isoform X1
SwissprotQ049969e-86HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A397ZCP31e-129A0A397ZCP3_BRACM; Uncharacterized protein
STRINGBo5g114050.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-61Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]