PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3523_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 403aa MW: 44903.7 Da PI: 4.8978

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3523_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.9	1.7e-82	37	402	3	374
GRAS 3 elLlecAeavss.gdle...laqalLarlselaspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++L+++A ++ g+ + laq++Larl+++ ++ + p+qR+a y+te L++ l++ pp+++ ++aa+++fse+sP+l f RrC3523_p1 37 QQLFNVAAELTGtGNGSppvLAQEILARLNHNLNNMNNpkpPFQRAALYVTESLQSLLQH--------SPPQPSL--PLFLKIAAHRAFSETSPFLHFV 125 566666655554255556669*********5555443449*************9........2333333..388999************ PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledle 190 ++t Nq+Ile+ g +r+ iiDfd+++G QW +L+q+La+R+ +++p sl++T ++sp+++ ++ el+ t+e+L+ fA e gv+fe +++ +++l + RrC3523_p1 126 NFTSNQTILESSVGFDRIRIIDFDVGYGSQWSSLIQELANRSsSSAPlSLKVTSFSSPSTVsDEFELRFTEENLRAFAGEAGVTFEMELMNMETLLNPP 224 **************************************744556*******9999***********************999999999 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvEre 288 l+ Lr + +Ea+aVnl ++ + + +L+++k++sP+vvv+++ +++F + +++al+yy++l++sl + + ++++ +++Er+ RrC3523_p1 225 LSLLRSSDKEAIAVNLPISSVIS--------GYLPLILRFLKQISPNVVVCSDT---IPDAPFPNVVIDALQYYASLLESLeSPNSSSQEAVTSSIERF 312 ***************954443........36677***********986...5778****************55555555588899 PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgWkdrpLvsvSaWr 374 +++++i+ +++++ ++ +e+ Wr+ +e++GF+pv++s++a++qa++ll++ +++g+++e++ slvl+W++ +Lv+vSaW+ RrC3523_p1 313 CVQPWIERLLSNRYRW----MEKSPPWRSLFEQCGFTPVAMSQTAETQAEYLLQRNPMRGFHLEKRqsssstttTTSLVLCWQKTELVAVSAWT 402 ************....****************************************8777788887999**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.361	13	374	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-80	37	402	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
WGHPFSDPGH PFLAPPKLAG TEEDYHHEEE SSTVITQQLF NVAAELTGTG NGSPPVLAQE 60 ILARLNHNLN NMNNPKPPFQ RAALYVTESL QSLLQHSPPQ PSLPLFLKIA AHRAFSETSP 120 FLHFVNFTSN QTILESSVGF DRIRIIDFDV GYGSQWSSLI QELANRSSSS APLSLKVTSF 180 SSPSTVSDEF ELRFTEENLR AFAGEAGVTF EMELMNMETL LNPPLSLLRS SDKEAIAVNL 240 PISSVISGYL PLILRFLKQI SPNVVVCSDT IPDAPFPNVV IDALQYYASL LESLESPNSS 300 SQEAVTSSIE RFCVQPWIER LLSNRYRWME KSPPWRSLFE QCGFTPVAMS QTAETQAEYL 360 LQRNPMRGFH LEKRQSSSST TTTTSLVLCW QKTELVAVSA WTC

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

WGHPFSDPGH PFLAPPKLAG TEEDYHHEEE SSTVITQQLF NVAAELTGTG NGSPPVLAQE  60
ILARLNHNLN NMNNPKPPFQ RAALYVTESL QSLLQHSPPQ PSLPLFLKIA AHRAFSETSP  120
FLHFVNFTSN QTILESSVGF DRIRIIDFDV GYGSQWSSLI QELANRSSSS APLSLKVTSF  180
SSPSTVSDEF ELRFTEENLR AFAGEAGVTF EMELMNMETL LNPPLSLLRS SDKEAIAVNL  240
PISSVISGYL PLILRFLKQI SPNVVVCSDT IPDAPFPNVV IDALQYYASL LESLESPNSS  300
SQEAVTSSIE RFCVQPWIER LLSNRYRWME KSPPWRSLFE QCGFTPVAMS QTAETQAEYL  360
LQRNPMRGFH LEKRQSSSST TTTTSLVLCW QKTELVAVSA WTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-27	55	401	19	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485145.1	0.0	PREDICTED: scarecrow-like protein 22
Swissprot	Q9M000	0.0	SCL22_ARATH; Scarecrow-like protein 22
TrEMBL	A0A078IEB3	0.0	A0A078IEB3_BRANA; BnaC04g22080D protein
TrEMBL	A0A3P6CFH9	0.0	A0A3P6CFH9_BRAOL; Uncharacterized protein
STRING	Bo4g104900.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15066	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60630.1	1e-165	GRAS family protein

Publications ? help Back to Top
Gustafson AM, et al. ASRP: the Arabidopsis Small RNA Project Database. Nucleic Acids Res., 2005. 33(Database issue): p. D637-40 [PMID:15608278] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]