PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3574_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 141aa    MW: 16025.3 Da    PI: 9.9717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3574_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.67.1e-08610454128
         NAM  54 eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgkdkevlskkgelvglkktLvfy.......k.........grapkgektdWvmheyrl 128
                 +++ewy+ ++r + ++     gk+++r +t+   sg+W+a  k+    ++++ ++g k+tL+f        k           a  g++++W+m ey l
  RrC3574_p1   6 KKNEWYYLVTRTQLSQkkigCGKKAKRkITRdndSGFWRANAKEDIPDKETNMAIGEKQTLAFVkskvnnkKqkkgdgtscDVAVPGSESSWIMTEYML 104
                 4689*99999877666334456677774444666*****999855444448888**********66665441333333332344455699*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.961122IPR003441NAC domain
SuperFamilySSF1019411.06E-105120IPR003441NAC domain
PfamPF023658.1E-710103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGSFFKKNEW YYLVTRTQLS QKKIGCGKKA KRKITRDNDS GFWRANAKED IPDKETNMAI  60
GEKQTLAFVK SKVNNKKQKK GDGTSCDVAV PGSESSWIMT EYMLPEIEGK FQELVICKIH  120
VIENSNKKKG HDDRQEASTS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474295.12e-92PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A0D2ZZQ23e-69A0A0D2ZZQ2_BRAOL; Uncharacterized protein
STRINGBo13819s010.14e-70(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.18e-08NAC domain containing protein 35