PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3591_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 211aa MW: 24352.3 Da PI: 6.5088

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3591_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9e-15	29	72	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT+eEd+ l+++v G g+W+t+a+ g++R++k+c+++w+ RrC3591_p2 29 KGPWTPEEDK-LLEYVSSNGEGRWSTVAKSAGLNRSGKSCRLKWR 72 79***997.569****************************8 PP
2	Myb_DNA-binding	48.9	1.5e-15	72	114	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+ RrC3591_p2 72 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWR 114 7888****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-16	22	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.363	24	79	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-25	26	113	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-9	28	77	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	29	72	IPR001005	SANT/Myb domain
CDD	cd00167	2.38E-9	31	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-18	76	117	IPR009057	Homeodomain-like
CDD	cd00167	2.06E-9	76	116	No hit	No description
Pfam	PF13921	8.4E-7	76	119	No hit	No description
SMART	SM00717	5.0E-6	78	119	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	10.316	80	121	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MLDWGVDQVH HPNHDHDPCK QQQQQGCRKG PWTPEEDKLL EYVSSNGEGR WSTVAKSAGL 60 NRSGKSCRLK WRGQITPQEE GIILELHSLW GNKWSTIARY LPGRTDNEIK NYWRAHYKKM 120 EISFSNQEKL VSQDNELNIA TSFSYPTSVY NDQFHMPQNV AATSIDHSMI DEEYDDPHVL 180 VVVQNREQLL ILLGSLTAAE MRLRRVDHGI I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-19	29	119	7	106	B-MYB
1h88_C	6e-19	3	119	28	157	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-19	3	119	28	157	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF371980	6e-56	AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
GenBank	AY519593	6e-56	AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013696010.1	1e-100	myb-related protein 305
TrEMBL	A0A3P6E154	2e-98	A0A3P6E154_BRAOL; Uncharacterized protein
STRING	Bo9g009020.1	4e-99	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	3e-82	myb domain protein 121