PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC36029_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 232aa MW: 26287.1 Da PI: 10.2189

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC36029_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.5e-23	81	168	6	95
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++l+++rl+l k+f++e+g++++++ +++l +e+g sW+++l+ ++ g ++ t+GW++F++ ngL++g f++Fkl++r ++ lv++ RrC36029_p1 81 VTPSSLQEDRLTLRKSFVRENGLETRCG-EIVLINEKGTSWKLNLKRMNSCGVMYVTRGWRRFCRVNGLRAGSFFTFKLMQRGGA-LVLR 168 68899999*************99887.************88888888************************996444.4554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	6.329	1	28	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.1E-21	72	167	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-20	74	169	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.03	76	173	IPR003340	B3 DNA binding domain
CDD	cd10017	3.14E-20	76	169	No hit	No description
SMART	SM01019	1.0E-24	77	173	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.4E-21	80	169	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	5.69E-5	171	215	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.8E-4	172	215	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
ANGLKTGGLY TFKLVQRGRT PVLRLSSTDS ELEEEESSEG DEVESLSTEP ESDEGTKTNF 60 EKIQRKKNLK RDTESCYVAN VTPSSLQEDR LTLRKSFVRE NGLETRCGEI VLINEKGTSW 120 KLNLKRMNSC GVMYVTRGWR RFCRVNGLRA GSFFTFKLMQ RGGALVLRLS SQFGNKFVTL 180 TLNPSSLTSY SLFLPLHFTK RHGINEKTKM TLLDKTVSNG LRICGLRKQV IE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484683.1	1e-120	PREDICTED: putative B3 domain-containing protein REM15
Swissprot	O23076	1e-56	REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBL	A0A0D3C1U7	1e-112	A0A0D3C1U7_BRAOL; Uncharacterized protein
STRING	Bo4g154850.1	1e-112	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	2e-53	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]