PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC36153_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 100aa    MW: 11583 Da    PI: 9.4381
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC36153_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.42.2e-116384122
                 ---SS-EEEEEEE--TT-SS-E CS
         WRKY  1 ldDgynWrKYGqKevkgsefpr 22
                 ldDgy+WrKYGqK+vk++ +pr
  RrC36153_p1 63 LDDGYRWRKYGQKSVKNNGHPR 84
                 59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-125084IPR003657WRKY domain
SuperFamilySSF1182907.06E-105585IPR003657WRKY domain
PROSITE profilePS5081112.7145884IPR003657WRKY domain
SMARTSM007742.0E-463100IPR003657WRKY domain
PfamPF031067.6E-86485IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MMPPLALPGE VEPSSSSWCP TSFHVPTQPP ENDQIGDQGK KKDKRSRKVP RIEFHTRSDD  60
DVLDDGYRWR KYGQKSVKNN GHPRYVPNTS ISLNLYMFMY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300421e-119KF430042.1 Brassica rapa WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635201.15e-56PREDICTED: probable WRKY transcription factor 24
RefseqXP_013743457.15e-56probable WRKY transcription factor 24
RefseqXP_013746877.15e-56probable WRKY transcription factor 24
RefseqXP_018484294.15e-56PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS32e-37WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A078I3P21e-54A0A078I3P2_BRANA; BnaCnng11190D protein
TrEMBLA0A0D3C0H41e-54A0A0D3C0H4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9J51e-54A0A3P6C9J5_BRAOL; Uncharacterized protein
STRINGBo4g142200.12e-55(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-31WRKY DNA-binding protein 24