PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3636_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 124aa    MW: 13465.6 Da    PI: 10.9802
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3636_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.75.4e-136085126
     G2-like  1 kprlrWtpeLHerFveaveqLGGsek 26
                k+r++WtpeLH+rFv+a++qLGG+ +
  RrC3636_p1 60 KQRRCWTPELHRRFVDALQQLGGPGV 85
                79*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-55887IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-105986IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-86083IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MLLSRGMRAT PKVETGLGLG LASSSMVDRR RRRKGMASCG IPSNSVPQPP PYLQQQALRK  60
QRRCWTPELH RRFVDALQQL GGPGVSPVSK TVKGLGPSLI PDGPATELIY LGPHHYSPTP  120
DPCT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488852.17e-36PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FX842e-23HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A078IPQ52e-33A0A078IPQ5_BRANA; BnaA06g03110D protein
TrEMBLA0A397YYP22e-33A0A397YYP2_BRACM; Uncharacterized protein
TrEMBLA0A397Z3S62e-33A0A397Z3S6_BRACM; Uncharacterized protein
TrEMBLA0A3P5YN742e-33A0A3P5YN74_BRACM; Uncharacterized protein
TrEMBLM4DQK12e-33M4DQK1_BRARP; Uncharacterized protein
TrEMBLV4MGV85e-33V4MGV8_EUTSA; Uncharacterized protein
STRINGBra018794.1-P3e-34(Brassica rapa)
STRINGXP_006393245.19e-34(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.19e-19G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]