PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC363_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 307aa MW: 33120 Da PI: 6.1632

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC363_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.2	9.1e-68	81	237	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstklssaes 96 rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + + ++ +kr+r++ + + st+l+s ++ RrC363_p4 81 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGGSgsgggGSSIPKRHRDT---TLPGTFSTHLPSDSA 177 67899**************************************************9998887776777667777777765...66777889999 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 e+e +s+P+e++s+a+frcv++s+vdd ++ ++aYqt+v+igGh+fkGiLydqG+e+ RrC363_p4 178 GLEMEEASFPPELNSDALFRCVKMSGVDDggDDGQYAYQTTVNIGGHLFKGILYDQGPES 237 *************************645668*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-61	84	236	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.0E-27	86	128	IPR006510	Zinc finger, lateral root primordium type 1
Gene3D	G3DSA:2.30.27.10	7.4E-4	115	154	No hit	No description
TIGRFAMs	TIGR01624	2.5E-26	186	235	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MFSLGGNNNN GEEDNQQQEE KTNWVWYRSN TNTNNINPSS SLWQIPPEQQ LLMHHNQPQQ 60 QSLDLYPGHQ IDVSDLATSS RSITISCRDC GNQAKKDCTH MRCRTCCKSR GFDCSTHVRS 120 TWIPVARRRE RQQQLHMSTS GGSGGSGSGG GGSSIPKRHR DTTLPGTFST HLPSDSAGLE 180 MEEASFPPEL NSDALFRCVK MSGVDDGGDD GQYAYQTTVN IGGHLFKGIL YDQGPESSYV 240 SGGSGGSDHQ SSSAGVGNPF NTPAVADGGG GSSTMFLDPN SSGYYSSNMA TMFPPPGTQF 300 YQNPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205264	0.0	GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018448425.1	1e-174	PREDICTED: protein SHI RELATED SEQUENCE 2-like
Swissprot	O65517	1e-148	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	V4ME11	1e-161	V4ME11_EUTSA; Uncharacterized protein
STRING	XP_006412014.1	1e-162	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13648	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	1e-126	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]