PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3661_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 173aa    MW: 20289.8 Da    PI: 8.8125
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3661_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1444.7e-1462123263
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 +  +r+rr+ +NRe+ArrsR R k+ ieeL++ v++L   N+ L +++ +l +   ++ +e+
  RrC3661_p1  62 CLERRARRMVSNRESARRSRIRTKKHIEELQQQVEQLMILNHNLSERVIHLLESNHQMLQEN 123
                 6678*****************************************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.6E-1061118No hitNo description
SMARTSM003381.9E-1061125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.17463126IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-1065117No hitNo description
PfamPF001702.1E-1265123IPR004827Basic-leucine zipper domain
CDDcd147021.57E-1366117No hitNo description
PROSITE patternPS0003606883IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MESSAHRSHH CFDILEGMSP QDDHVNSTFL PNANFHVPLQ SLSKRNNNNG SHLDPNIYHN  60
ECLERRARRM VSNRESARRS RIRTKKHIEE LQQQVEQLMI LNHNLSERVI HLLESNHQML  120
QENSMLREKV SSFQLLMVEM QIPMRNVDGS ISDRVVNHLR GETSNRTNTF FGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1496351e-151AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438681.11e-122PREDICTED: basic leucine zipper 43-like
TrEMBLA0A078HWI91e-101A0A078HWI9_BRANA; BnaAnng06600D protein
STRINGBo2g161130.16e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.11e-74basic leucine-zipper 70