PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3662_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 227aa    MW: 24739.3 Da    PI: 4.0467
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3662_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.56.4e-1310102794
       NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 +lP+a v r++k+ l +     +  i k+a     e +  fi ++++ a+d c+  +r+t++++d++ al ++ f +++ plk+ l+ +++ +
  RrC3662_p1  10 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDVCKDSRRQTMKAEDVFKALEDMEFSEFLGPLKASLEDFKKKN 102
                 79**********999752222356899***********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-2510109IPR009072Histone-fold
PfamPF008081.9E-81079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.1E-2011109IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-25160189IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDSEKSVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND  60
VCKDSRRQTM KAEDVFKALE DMEFSEFLGP LKASLEDFKK KNAGKKAAAA GGGGGSGAAA  120
ASKPKETKKR KHEEEASTQK GVTKSKRDEG DLEKNVEDDN TKENEDDNTE ENGNDDEEEE  180
EEDAADGNEE NSMEENGNED NSMEEAGSGS GSGEDDENEG IGEEDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-103BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440863.11e-110PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A397YKX31e-91A0A397YKX3_BRACM; Uncharacterized protein
TrEMBLM4D6A71e-91M4D6A7_BRARP; Uncharacterized protein
STRINGBra012016.1-P2e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-62nuclear factor Y, subunit B11