PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC367_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 564aa    MW: 65418.2 Da    PI: 6.7485
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC367_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.97.2e-2833135190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                +fY+eYAk+vGF++ +++s++s+++g++++++fvC+++g++++++ +             +++ r++r++++t+Cka+l+vkk++dg+w++  l++eHnH
  RrC367_p2  33 EFYKEYAKSVGFNTIIKASRRSRMSGKFIDAKFVCTRYGRKKTDQGEgdeeegidnipqaRKRGRTNRSSSKTDCKACLHVKKRQDGRWVIRALVKEHNH 132
                6******************************************99999**********99999999********************************** PP

       FAR1  88 ela 90 
                e +
  RrC367_p2 133 ETF 135
                976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2533135IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.977299335IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-6301333IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-6310337IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MVIDLEMPSP SGECDDERIN EGLEFESKEE AFEFYKEYAK SVGFNTIIKA SRRSRMSGKF  60
IDAKFVCTRY GRKKTDQGEG DEEEGIDNIP QARKRGRTNR SSSKTDCKAC LHVKKRQDGR  120
WVIRALVKEH NHETFPGQAS SGDEFEKKWC EVVDRFRLRD NAWLQSLYED RERWVPVYMK  180
GVSLAGMCTA QRSECVSSVF DKYIQRKTTL RAFLDQYKTM IQERYEEEEK AETETLCKQP  240
GLKSPSPFGK QMVELYTREM FKKFQVEVLG GVACHPKNES DEGQRKTFRV QDYEQKRGFV  300
VVWSPESSEV VCSCRLFEFK GFLCRHAMIV LQMSGELTIP SRYVLKRWTK DARRREAVEC  360
DLMCGDSSKA QRYTDLCLRS LKLSEEASLS EESYNAVLNV LNEALRSCEN TSNVIHGVEE  420
LNSDAAQNHS RHEEHNNNSF NENVADTGQE HSLHEVWKAT ALQEQRNRYS ILDDYLSAQQ  480
MSQEMGQINM MASTRNGYVT AHQNIHSLGQ SITQQRLYGT EQLSFRPEVM YERLQDMGQA  540
SFRHHPQQHS DYTKQHQPNK DFSN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464344.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 1
SwissprotQ5UBY20.0FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBLV4P7110.0V4P711_EUTSA; Uncharacterized protein
STRINGXP_006413913.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.20.0FAR1-related sequence 1