PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3681_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 209aa MW: 23694.5 Da PI: 4.7602

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3681_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.1	1.7e-29	109	196	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a+l ++ke++gkw++tk+ +eHnH+l+p RrC3681_p3 109 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMLLIRKENSGKWVITKFAKEHNHPLMP 196 9****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-27	109	196	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MCFCSPVVDF RIDNGDAVGM MMEIPVENHN EMGESSGQAM TLEQHDENHN EIGESSNQAM 60 TLEQDEKVDP DSIPLDVSDM AEEEEEEEVQ GDEPYVGQEF ESEAAAHGFY NAYATKVGFV 120 IRVSKLSRSR HDGSPIGRQL VCNKEGYRLP SKRDKVIRQR AETRVGCRAM LLIRKENSGK 180 WVITKFAKEH NHPLMPGRVR RGCIYDQYP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138659	1e-113	AL138659.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T16L24.
GenBank	AL356014	1e-113	AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23.
GenBank	AY058089	1e-113	AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBank	AY143081	1e-113	AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
GenBank	CP002686	1e-113	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487130.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SZL8	2e-26	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A397YC75	1e-132	A0A397YC75_BRACM; Uncharacterized protein (Fragment)
TrEMBL	A0A3P5YSU9	1e-132	A0A3P5YSU9_BRACM; Uncharacterized protein (Fragment)
STRING	Bo8g093280.1	1e-130	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-113	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]