PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3747_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 160aa    MW: 17152.2 Da    PI: 9.1223
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3747_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.4e-212372255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++ a+++++g
  RrC3747_p4 23 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDSAAREFRG 72
                7********.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-332380IPR001471AP2/ERF domain
PfamPF008478.8E-152372IPR001471AP2/ERF domain
CDDcd000189.97E-332380No hitNo description
PROSITE profilePS5103224.2892380IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-232382IPR016177DNA-binding domain
SMARTSM003802.9E-392386IPR001471AP2/ERF domain
PRINTSPR003676.3E-122435IPR001471AP2/ERF domain
PRINTSPR003676.3E-124662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSPRPENAGH AGVSGVGKIK EVHYRGVRKR PWGRYAAEIR DPGKKTRVWL GTFDTAEEAA  60
RAYDSAAREF RGSKATTNFP FSGGDGGGNA LGTHVTAREG VCGNNAVSGF FLDLPHATAS  120
REELVRGLPV RFEPIEMGLS IGHKTTDLNL DLSLAPSMDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-232386569ATERF1
3gcc_A7e-232386569ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449794.11e-113PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9FE678e-54ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A397XHP61e-89A0A397XHP6_BRACM; Uncharacterized protein
TrEMBLM4DFJ31e-89M4DFJ3_BRARP; Uncharacterized protein
STRINGBra015266.1-P2e-90(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.15e-45erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]