PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3760_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 412aa    MW: 47479.3 Da    PI: 4.9989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3760_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.4e-102032802092
                 HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3  20 kkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 kk+a++    + kk++++++ l +++g +W+++++++  +++  y l +GW++ v+ n+L+ + ++++   ++++++l
  RrC3760_p4 203 KKHAKKKgvdDDKKPKGVDVFLLNRNGIKWNLNMRIWEMRSTfnYALCTGWNDLVRKNDLQINQTITLWSFHSRDGKL 280
                 455555599988889*******************8877777779**********************987444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037542.5E-31137258IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.109.3E-17155291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-11158287IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-9158284No hitNo description
PROSITE profilePS5086310.151222288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVTHDDDNKR SAGEKRCFDL FATLLHAYGD DEIRARRSQE EQERNMLMIR TVINAATNTF  60
LLGKRKIDDL ECKNQENTAS SSDSSPSLVE SKRRRRVVES DDEEPIRAEP IREIKPPVRE  120
RKGPVKRKEP VGGEPVETPE WVYKLMETNN GDGKAKMIFE KALTMTDLAP NQARLLMPFL  180
QIADKNFLTE AERKILKEHQ EAKKHAKKKG VDDDKKPKGV DVFLLNRNGI KWNLNMRIWE  240
MRSTFNYALC TGWNDLVRKN DLQINQTITL WSFHSRDGKL YFAFDLSNQD HEAMALALVP  300
VNPASSSEDP FEISEDPFEC EEASRRFYQF ITRRRTPRVC VQIITNDSGY LEGGLDLNRT  360
PPPEDTDEMD LDLEDVQETH VRSSTSQESL TETSLASWRF LEEGETAVLY ET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479859.10.0PREDICTED: B3 domain-containing protein At2g31720-like
TrEMBLA0A078FR870.0A0A078FR87_BRANA; BnaC04g42190D protein
STRINGBra021717.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM275656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.11e-09B3 family protein