PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC378_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 214aa    MW: 23746 Da    PI: 7.6458
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC378_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-2077111135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  RrC378_p6  77 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-1971123IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.99571107IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-1373112No hitNo description
Gene3DG3DSA:3.30.50.103.2E-1775111IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.89E-1476108No hitNo description
PROSITE patternPS00344077102IPR000679Zinc finger, GATA-type
PfamPF003204.5E-1877111IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGFSMFFSSE NEVVHHSSPY ASVDCTLSLG TPATRLCNDD DDRRFSSHTS NRLGWDFLHG  60
SRKGSGGGGN NLPPRRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRASTTGIST  120
SGGGSTAAGV PTSHQHGGAN YYYNNKDHYA SPSPWIHHQH HNTQRVPYYT PANNEYYSFV  180
DDVRAENHDV TADPFLSWRL NVADQTGLMH DFMM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449715.11e-137PREDICTED: GATA transcription factor 19
SwissprotQ6QPM21e-102GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A3P6B1R11e-124A0A3P6B1R1_BRAOL; Uncharacterized protein
STRINGXP_006411982.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.15e-91GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]