PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3862_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 201aa MW: 22608.7 Da PI: 6.6503

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3862_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1e-37	4	103	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++ Cv+apyfp ++++++ ++hk+FGas+v k+l++l++++r+da++slvyeA+ + dPv+G+ i +lq+ql+ l+ +++ +++ RrC3862_p2 4 PCAACKYLRRKCTQACVFAPYFPPNKQEDYTAIHKVFGASQVAKILNDLHPSQRQDAVTSLVYEAQTLLLDPVHGCSLQICNLQRQLKDLQDQVQIARN 102 7********************************************************************************************999887 PP DUF260 100 e 100 RrC3862_p2 103 D 103 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.746	3	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-37	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MTTPCAACKY LRRKCTQACV FAPYFPPNKQ EDYTAIHKVF GASQVAKILN DLHPSQRQDA 60 VTSLVYEAQT LLLDPVHGCS LQICNLQRQL KDLQDQVQIA RNDLAPYNNI VPSLDLQDQV 120 QIARNDLAPY NNIVPPLDLP PPITYQQNIH NPMLMPVVSN YGGQLTSQQL NEEAHRVESE 180 KSAQVKQMQQ NAAQSKRDDC P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	3	107	10	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	3	107	10	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469585.1	1e-140	PREDICTED: LOB domain-containing protein 28
TrEMBL	A0A291LR12	1e-105	A0A291LR12_BRARR; Transcription factor LBD28
TrEMBL	A0A398AVI7	1e-105	A0A398AVI7_BRACM; Uncharacterized protein
STRING	Bo1g084820.1	1e-105	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	2e-52	LOB domain-containing protein 28