PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3881_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 266aa    MW: 30404 Da    PI: 7.8191
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3881_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.68.7e-31133187256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 +r+rW+++LH+rFv+a++++GGs++AtPk+i++ mkv+gLt+++vkSHLQkYR++
  RrC3881_p2 133 QRRRWSQDLHRRFVDALQRIGGSQVATPKQIRDEMKVDGLTNDEVKSHLQKYRMH 187
                 8****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.515129189IPR017930Myb domain
SuperFamilySSF466892.51E-16130190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-27130190IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25133187IPR006447Myb domain, plants
PfamPF002491.0E-6134185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLLLNEAIET LKEEASSVMM GSNGRFDVGG GAKSESDHKK NWMSSAQLWI SNSNSTNREE  60
DRGVTQTPFQ TCNNLNQRGV FMPFNPPPPP VPLSLMTPPP SDMMMRDCSR IEQNHQLNRP  120
LQSHHHHIPK KEQRRRWSQD LHRRFVDALQ RIGGSQVATP KQIRDEMKVD GLTNDEVKSH  180
LQKYRMHIRK HPPGKTLLSL DQPGRETQSL ISLSRSDSPQ SPLVDRELFS NNGGHSSEDE  240
EEEEKSDGRS WKSESDKKRQ VLNLEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134PKKEQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0398416e-84AY039841.1 Arabidopsis thaliana AT4g37180/C7A10_180 mRNA, partial cds.
GenBankBT0289856e-84BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450124.11e-172PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB01e-103HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A078I1W81e-140A0A078I1W8_BRANA; BnaA08g15490D protein
TrEMBLA0A397YDQ31e-140A0A397YDQ3_BRACM; Uncharacterized protein
STRINGBra010581.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-95G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]