PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3886_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 249aa    MW: 28349.3 Da    PI: 9.8062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3886_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.86.6e-34521781128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlskkge 98 
                 lp G+rFhPtd+el+ +yL +k+ +++l+  ++i+ +d+++++P ++p   ++ee++ yfF+k++++ ++  +r + +  +gyWk t k++e+++  g+
  RrC3886_p2  52 LPIGYRFHPTDQELILHYLLPKAFASPLPS-SIIPVFDVFSSHPLTFPG--DQEENKRYFFCKKRREVSSnPHRIKISSGDGYWKPTRKEREIIA-CGR 146
                 699*************************99.88***************3..4577899******9998861455555889***************.999 PP

         NAM  99 lvglkktLvfy..kgrapkgektdWvmheyrl 128
                 +vg+++tL+fy  +++++k +kt+W m ey l
  RrC3886_p2 147 TVGIRRTLAFYetNKSSSKCNKTRWSMTEYCL 178
                 ***********4434667778*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-4045197IPR003441NAC domain
PROSITE profilePS5100538.64552198IPR003441NAC domain
PfamPF023652.7E-2053178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
AKPTKQNVTR VFLLSLSVSL APCSFSLEKQ YWKKREDMEV EKRTMVNGGM KLPIGYRFHP  60
TDQELILHYL LPKAFASPLP SSIIPVFDVF SSHPLTFPGD QEENKRYFFC KKRREVSSNP  120
HRIKISSGDG YWKPTRKERE IIACGRTVGI RRTLAFYETN KSSSKCNKTR WSMTEYCLAG  180
FASTKVSGDW AVYNVYERKA SKGRRQRKSS GRYDEEELSC IDFTIGSDHE TGPPPPSPPT  240
SADESGSII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-20381991169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445335.11e-147PREDICTED: NAC domain-containing protein 41
TrEMBLA0A0D3EFM61e-141A0A0D3EFM6_BRAOL; Uncharacterized protein
STRINGBo9g166250.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-114NAC domain containing protein 84