PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC394_p9
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 167aa    MW: 18732.7 Da    PI: 6.794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC394_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-31106164159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYG+K+vk+s++pr+Y++C+  gCpvkk+ver+ +dp++v++tYeg Hnh+
  RrC394_p9 106 LDDGFKWRKYGKKMVKNSPNPRNYFKCSADGCPVKKRVERDGDDPRFVITTYEGFHNHS 164
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3292165IPR003657WRKY domain
SuperFamilySSF1182901.44E-2799164IPR003657WRKY domain
PROSITE profilePS5081129.826101166IPR003657WRKY domain
SMARTSM007743.5E-36106165IPR003657WRKY domain
PfamPF031062.0E-24107163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MFSDDTYSGF DLPDMYLSDE WMDDDLVSAV SGMNHSYGYQ TSDDAHHPAA FFSGSSSSFD  60
HPKSPSTNAS VAAATATSSA EKQIKKEKKK VKERVAFKTQ SDVEVLDDGF KWRKYGKKMV  120
KNSPNPRNYF KCSADGCPVK KRVERDGDDP RFVITTYEGF HNHSSMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2696163774Probable WRKY transcription factor 4
2lex_A4e-2696163774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483378.11e-120PREDICTED: probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ59e-83WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A078IRM84e-96A0A078IRM8_BRANA; BnaC07g49530D protein
TrEMBLA0A0D3DCP24e-96A0A0D3DCP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4Y54e-96A0A3P6E4Y5_BRAOL; Uncharacterized protein
STRINGBo7g095430.17e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-64WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]